PLANT PHYSIOLOGY


      
Data associated with ABRACOS plant physiology measurements are grouped as follows: (a) pasture structure, (b) porometry and (c) In-canopy forest profiles. Some of these data were recorded during the intensive field missions and may be cross-referenced with the coincident micrometeorological data, as well as the continuously monitored climate and soil moisture data. Site and mission details are given in the files AB-AWS.TXT and AB-MMET respectively.

PASTURE STRUCTURE file: ABR-LAI.DAT in VEG1.EXE

This file contains a self explanatory tabulation of pasture physical properties including height, leaf and stem area index, leaf stem and dead material dry biomass, together with the relevant dates and site codes. Quantities are given as means, together with sample standard deviation, maximum, minimum and sample size.

Data were recorded at Fazenda Dimona during the first two missions (M1 and M2) where the grass species were Brachiaria decumbens and B. Humidicola (McWilliam et al 1993). All other data is from Fazenda Nossa Senhora (M3, M4 and M5) where the grass species was Brachiaria Brizantha. Grass was sampled for analysis using a 0.5m x 0.5m quadrat which was randomly placed within the area monitored for water vapour flux data. All vegetative material within the quadrat was removed and analyzed for leaf area and dry biomass within one or two days of removal.

N.B. The M4 leaf and stem area indices were estimated using calculations of specific leaf area obtained from the M3 data.

POROMETRY

files: (all in VEG1.EXE)
M2FDLEAF.DATM3RJLEAF.DAT
M3NSLEAF.DATM4RJLEAF.DAT
M4NSLEAF.DATM5RJLEAF.DAT
M5NSLEAF.DAT

These files contain leaf physiology data from the Ji-Parana and Manaus pasture (NS and FD) and Ji Parana forest (RJ), recorded during or close to the time of the Missions 2 - 5, (see also McWilliam et al. 1995). The file format is the same in all files and is as follows:

HEADER LINE Column headers.

DATE LINE
This line gives the date on which the data were recorded, followed by an integer giving the number of following data lines for that day.

DATA LINES
The data lines have twenty two 7-character data elements, space delineated in free format. With the exception of leaf water potential, which was measured using a Scholander pressure chamber, all data where recorded using an ADC Mk3 Infra-red Gas Analiser. Missing data appear as -99. The data columns are as follows:
Column 1
Vegetation type. The following codes are used to indicated the vegetation species on which the measurement was made.

Pasture

B.DecumPasture grassBrachiaria Decumbens
B.HumidPasture grassBrachiaria Humidicola
B.BrizPasture grassBrachiaria Brizantha
Mela#1ShrubSp. Melastoma #1
Mela#2ShrubSp. Melastoma #2
LacreShrubSp. Lacre
PalmPalmSp. Palmae

Forest: eight trees (T1-8) and three species of lianas (L1-3) as follows (further details are given in McWilliam et al. 1995):

T1Cedrella odorata (Meliaceae)
T2Inga sp. (Leguminosae-Mimoseaceae)
T3Protium polybotrium (Burseraceae)
T4Leonia glycicarpa (Violaceae)
T5Guarea cf. da visii (Meliaceae)
T6Hirtella hispidula (Crysobalanaceae)
T7Erythroxyllum cf. macrophyllum (Eryth.)
T8Theobroma microcarpum (Sterculaceae)
T9Maximiliana maripa (Palmae)
L1Dioclea (Leguminaceae-Papilloniaceae)
L2Derris pterocarpa (Legumin.-Papillon.)
L3Strychnos amazonicus (Loganiaceae)
Column 2
Additional information relating to the sampled leaves, including 'SUN','SHADE','OLD' (leaves),'NEW' (leaves). '#' indicates no information.
Column 3
for Pasture Number of plots sampled
for Forest Number of leaves sampled.
Column 4
Decimal local time (hours).
Column 5
Height from the ground (m).
Column 6
Photosynthetically active radiation (PAR) in micro-mols m-2 s-1.
Column 7
Air temperature near the leaf (Ta) in degrees C.
Column 8
Leaf temperature (Tl) in degrees C.
Column 9
Stomatal conductance (gs) in millimols m-2 s-2.
Column 10
Net photosynthesis (pn) in micromols m-2 s-1.
Column 11
Concentration of intercellular carbon dioxide (CO2) in micromols m-2 s-1.
Column 12
Leaf evaporation
Column 13-19
Standard deviations of the mean values appearing in columns 6 - 12.
Column 20
Decimal local time (hours)for the leaf water potential measurement that was closest in time to the current data line.
Column 21
Leaf water potential in MPa.
Column 22
Standard deviation of leaf water potential.

IN-CANOPY FOREST PROFILES
Files: in AB-VEG1.EXE
AB-VEG2.EXE
AB-VEG3.EXE
These files contain 10 minute profiles of PAR (in VEG1) or temperture, humidity and wind speed (TDU in VEG2 and VEG3) at the Manaus and Ji-Parana forest sites. The profiles have six levels from the top of the canopy to about 5m from the ground (see below).
The file name format is as follows.
[code][n][type][#].DAT

where

codeis RD for Manaus or RJ for Ji-Parana
nis the mission number 1,2,3 or 45
typeis the data type PAR or TDU
#is the sequence letter

PHOTOSYNTHETICALLY ACTIVE RADIATION (PAR)

The PAR files contains either 20 (RD) or 17 (RJ) 6-character columns in which the ten minute mean PAR is given as an integer in micro-mols m-2 s-1. THE FILES ARE SYSTEMATICALLY DISCONTINUOUS omitting the irrelavent zero (or near zero) night time period of 19.10 - 05.00. The column details are tabulated below. Data were recorded using leveled quantum radiation sensors, model SKP 215 (skye Instruments Ltd, Powys, UK). Sensors were typically 1.5m - 2.5m from the instruments tower and located as follows

FileRDRJ
columnDataheight from ground (m)Direction from towerheight from ground 9(m)Direction from tower
1Day----
2Time----
3PAR35.0East35.0East
4PAR35.0West35.0West
5PAR35.0West21.3Eas
6PAR25.0East21.3Wes
7PAR25.0East21.3West
8PAR25.0West15.7East
9PAR20.0East15.7East
10PAR20.0West15.7West
11PAR20.0West11.6East
12PRA15.0East11.6Wes
13PAR15.0East11.6West
14PAR15.0West6.1Eas
15PAR10.0East6.1West
16PAR10.0West2.3East
17PAR10.0West2.3West
18PAR5.0East--
19PAR5.0East--
20PAR5.0West--

TEMPERATURE, HUMIDITY AND WIND SPEED(TDU)

Temperature and humidity deficit were measure using aspirated psychrometers (IH, Wallingford UK) and wind speed using type A100 anemometers (Vector instruments, Rhyl, UK). The data files contain ten minute averages in free format with 7-character columns as follows:

ColumnData
1Day number
2Local Time
3 - 8Temperature (oC)
9 - 14Specific humidity deficit (g/kg)
15 - 20Wind speed (m/s)

The six columns for each quantitiy are arranged in order of height with the highest instrument first. The instrument heights were 35m and then every 5m from 25m to 5m.

REFERENCES

McWilliam, A-L.C., Roberts, J.M., Cabral, O.M.R., Leitao, M.V.B.R., de Costa, A.C.L. Maitelli, G.T. and Zamparoni, C.A.G.P., 1993. Leaf area index and above-ground biomass of terra firme rain forest and adjacent clearings in Amazonia. Functional Ecol., 7: 310-317.

McWilliam, A-L.C., Cabral, O.M.R., Gomes, B.M., Esteves, J.L., Roberts, J.M., 1996. Forest and pasture leaf-gas exchange in south-west Amaz"nia. In 'Amazon Deforestation and Climate' (Eds. J.H.C.Gash, C.A.Nobre, J.M.Roberts and R.L.Victoria). John Wiley, Chichester, UK. pp 265-286.